Training materials
Scientific topics: Transcriptome
and Contributors: Anton Nekrutenko or Clair Castle or Emily Angiolini or James Taylor or Jure Dimec or Kaivan Kamali or Portada: Enrique Sahagún or Prof. Tom Freeman or Susan Coort or Wendi Bacon or Yvonne Kallberg
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hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
De novo transcriptome reconstruction with RNA-Seq
• beginnerTranscriptomics -
hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Reference-based RNAseq data analysis (long)
• beginnerTranscriptomics -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell