Training materials
Resource type: hands-on tutorial
and Contributors: Anton Nekrutenko or Biocore@CRG or Björn Grüning or Celia van Gelder or Jamie Edwards or Manimozhiyan Arumugam or Marek Vrbacky or Maria Lehtivaara or PhD BSc FSB
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Genome Annotation annotation cookbook eukaryote evolution microgalaxy prokaryote vgp -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
JavaScript plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote