Training materials
Contributors: Anton Nekrutenko or Anup Kumar or Bioinformatics, Rockefeller University or Célia Michotey or David Castillo or Lucille Delisle or Mehmet Tekman
-
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
RockefellerUniversity/RU_tidyverse_core
-
RockefellerUniversity/RU_reproducibleR
-
RockefellerUniversity/IGV_course
-
RockefellerUniversity/RU_GenomicVariants
-
RockefellerUniversity/RU_VisualizingGenomicsData
-
RockefellerUniversity/Intro_To_R_1Day
-
RockefellerUniversity/Bioconductor_Introduction