Training materials
Difficulty level: Beginner
and Contributors: Anne Pajon or Delphine Lariviere or Dr. Alexander Lex or Erasmus+ Programme or Michael Ball or Mihaela Martis or Sandra Orchard or Vicky Schneider
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hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
RStudio in Galaxy
• beginnerUsing Galaxy and Managing your Data interactive-tools -
hands-on tutorial
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses
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