Training materials
Contributors: Anne Fouilloux or Delphine Lariviere or Eija Korpelainen or Lucille Delisle or Michael Parkin or Saskia Hiltemann or The Carpentries
-
slides
Galaxy Administrator Time Burden and Technology Usage
• beginnerGalaxy Server administration deploying maintenance survey -
hands-on tutorial
Creating a Special Interest Group
• beginnerGalaxy Community Building -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
ekorpela/cloud-vm-workshop
-
hands-on tutorial
Deploying a Beacon v1 in Galaxy
• beginnerGalaxy Server administration beacon ga4gh git-gat