Training materials
Contributors: Anne Fouilloux or Björn Grüning or Coline Royaux or Delphine Lariviere or Mehmet Tekman or Vitor Sousa or rstudio::conf(2022)
-
hands-on tutorial
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
rstudio-conf-2022/intro-to-tidyverse
-
rstudio-conf-2022/teach-ds
-
rstudio-conf-2022/build-tidy-tools
-
rstudio-conf-2022/wtf-rstats