Training materials
Contributors: Anne Fouilloux or Anne Pajon or Eija Korpelainen or Mehmet Tekman or Michael Parkin or Sundeep Agarwal or The Carpentries or The Carpentries Lab
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
carpentries-lab/metagenomics-organization
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carpentries-lab/metagenomics-shell
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carpentries-lab/metagenomics-R
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carpentries-lab/metagenomics-workshop
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carpentries-lab/metagenomics-analysis
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ekorpela/cloud-vm-workshop
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learnbyexample/100_page_python_intro