Training materials
Contributors: Anna Syme or Daniel Blankenberg or Dr. A.J. Pretorius or Jaime Morris or John Chilton or Michael Ball or Pavankumar Videm or Prof. Michael J E Sternberg or Robert Andrews or Vicky Schneider or carpentries-incubator
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
carpentries-incubator/R-ecology-lesson-intermediate
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carpentries-incubator/gitlab-novice
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carpentries-incubator/fair-for-leaders
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carpentries-incubator/scrna-seq-analysis
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carpentries-incubator/lc-litsearchr
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carpentries-incubator/python_packaging