Training materials
Scientific topics: Microbial genetics or Small-Seq
and Contributors: Anna Syme or Björn Grüning or Brane Leskosek or Lennart Martens or Praveen Kumar or Robert Andrews or UC Davis Bioinformatics Core Training Page
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ucdavis-bioinformatics-training/2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ
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ucdavis-bioinformatics-training/2022-December-Spatial-Transcriptomics
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ucdavis-bioinformatics-training/2022-July-Advanced-Topics-in-Single-Cell-RNA-Seq-ATAC
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ucdavis-bioinformatics-training/2021-August-Advanced-Topics-in-Single-Cell-RNA-Seq-Trajectory-and-Velocity
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ucdavis-bioinformatics-training/2023-June-RNA-Seq-Analysis
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ucdavis-bioinformatics-training/2023-December-Single-Cell-RNA-Seq-Analysis
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ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis
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ucdavis-bioinformatics-training/2020-Advanced_Single_Cell_RNA_Seq
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hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote