Training materials
Include archived: true
and Contributors: Anna Syme or Bazante Sanders or Daniel Faria or Dr. Konstantinos Sidiropoulos or Janick Mathys or Mehmet Tekman or The Carpentries Lab
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
carpentries-lab/metagenomics-organization
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carpentries-lab/metagenomics-shell
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carpentries-lab/metagenomics-R
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carpentries-lab/metagenomics-workshop
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carpentries-lab/metagenomics-analysis
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hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing