Training materials
Contributors: Anna Syme or Bérénice Batut or Carina Silva or Janick Mathys or Munazah Andrabi or Nicola Soranzo or Pavankumar Videm or Stephan Nylinder or Teaching materials at the Harvard Chan Bioinfor...
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
hbctraining/BBS230B_2023
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hbctraining/RNA-seq-CB321qc_2022
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hbctraining/Peak_analysis_workshop
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hbctraining/reproducibility-tools
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hbctraining/rnaseq-cb321