Training materials
Scientific topics: Sequence assembly
and Target audience: Any students, postdocs or RAs who have an inter... or Biomedical researchers or Patient Advocates or PhD students or Students
and Contributors: Anna Syme or Anton Nekrutenko
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hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote