Materials - TeSS (Training eSupport System)

Training materials

Register training material

Resource type: hands-on tutorial

and Contributors: Anil S. Thanki or Charlotte Soneson or Mehmet Tekman or Munazah Andrabi or Saskia Hiltemann

49 materials found

hands-on tutorial

Creating a Special Interest Group

• beginner
Galaxy Community Building
hands-on tutorial

Converting NCBI Data to the AnnData Format

• beginner
Single Cell data import data management
hands-on tutorial

Converting between common single cell data formats

• beginner
Single Cell data import data management
hands-on tutorial

Generating a single cell matrix using Alevin and combining datasets (bash + R)

• beginner
10x Single Cell jupyter-notebook paper-replication
hands-on tutorial

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

• beginner
10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook
hands-on tutorial

Data visualisation Olympics - Visualization in R

• beginner
Software engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook
hands-on tutorial

Identification of AMR genes in an assembled bacterial genome

• beginner
Whole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health
hands-on tutorial

RNA-seq Alignment with STAR

• beginner
Transcriptomics
hands-on tutorial

Sequence data submission to ENA

• beginner
ENA FAIR FAIR Data, Workflows, and Research
hands-on tutorial

Deploying a Beacon v1 in Galaxy

• beginner
Galaxy Server administration beacon ga4gh git-gat

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