Training materials
Contributors: Anil S. Thanki or Bang Wong or Björn Grüning or Branka Franicevic or Dr. Scooter Morris or Jamie Edwards or Jan Slifka or Manimozhiyan Arumugam or Marek Suchanek or Pavankumar Videm or Sonika Tyagi
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
slides
Galaxy from an administrator's point of view
• beginnerGalaxy Server administration -
Video
RDMbites | Sequencing Data QC: causes and consequences