Training materials
Contributors: Anika Erxleben or Bioinformatics, Rockefeller University or Collins Assisi or Lennart Martens or Maria Doyle or Marius van den Beek or Mehmet Tekman or Vilem Ded
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
RockefellerUniversity/RU_tidyverse_core
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RockefellerUniversity/RU_reproducibleR
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RockefellerUniversity/IGV_course
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RockefellerUniversity/RU_GenomicVariants
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RockefellerUniversity/RU_VisualizingGenomicsData
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RockefellerUniversity/Intro_To_R_1Day
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RockefellerUniversity/Bioconductor_Introduction
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hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs