Training materials
Scientific topics: Antimicrobial Resistance
and Contributors: Anika Erxleben or Bazante Sanders or Celia van Gelder or Emily Angiolini or Florian Christoph Sigloch or Jyoti Khadake or Mehmet Tekman or Prof. Tom Freeman or Stephen Taylor or The Carpentries Lab
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore