Training materials
Target audience: Any students, postdocs or RAs who have an inter... or Anyone wants to start using the Unix/Linux OS or Biomedical researchers or PhD candidates or Students
and Contributors: Andrea Bagnacani or Simon Gladman
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hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Visualization of RNA-Seq results with CummeRbund
• beginnerTranscriptomics -
hands-on tutorial
Downloading and Deleting Data in Galaxy
• beginnerUsing Galaxy and Managing your Data -
slides
Genome annotation with Prokka
• beginnerGenome Annotation prokaryote -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly
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