Training materials
Scientific topics: Sequence databases
and Contributors: Andrea Argentini or Eija Korpelainen or Emma Leith or Espen Aberg or Helena Rasche or John "Scooter" Morris or Martin Krzywinski or Martina Kutmon or Mateusz Kuzak or Melanie Föll or Patricia Palagi or Prof. Tom Freeman or Software Carpentry or Wolmar Nyberg Åkerström
-
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Mapping
• beginnerSequence analysis Mapping