Training materials
Contributors: Andrea Argentini or Dr. Simon Tomlinson or Emily Angiolini or Erwan Corre or Frederick Carver or Hana Pergl Sustkova or John "Scooter" Morris or Kaivan Kamali or Martin Krzywinski or Mateusz Kuzak or Patricia Palagi or Prof. Tom Freeman or Sabine Österle or Saskia Hiltemann or Wendi Bacon
-
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
video
RDMbites | Decolonising data management in the biosciences
-
video
RDMbites | Data management and disabilities
-
video
RDMbites | EDIJ and decolonisation in data management
-
video
RDMbites | EDIJ and decolonisation in data management: why should I care?
-
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology