Training materials
Contributors: Andrea Argentini or David Philip Judge or Gary Saunders or Jure Dimec or Mateusz Kuzak or Nicola Mulder or Patricia Palagi or Pavankumar Videm or Prof. Tom Freeman or Wendi Bacon
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
video
RDMbites | Decolonising data management in the biosciences
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video
RDMbites | Data management and disabilities
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video
RDMbites | EDIJ and decolonisation in data management
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video
RDMbites | EDIJ and decolonisation in data management: why should I care?
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hands-on tutorial
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics