Training materials
Contributors: Andrea Argentini or Coline Royaux or Dr. Simon Andrews or Dr. Simon Tomlinson or John "Scooter" Morris or Kaivan Kamali or Marko Vidak or Martin Krzywinski or Mateusz Kuzak or Mehmet Tekman or Ms. Sejal Modha or Patricia Palagi or Prof. Tom Freeman or SIB Swiss Institute of Bioinformatics
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sib-swiss/SPARQL_course
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hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
sib-swiss/spatial-transcriptomics-training
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sib-swiss/reproducible-analysis-training
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sib-swiss/ena-seqdata-training
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sib-swiss/Introduction-FAIR-RDM-DMP
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sib-swiss/Data-analysis-in-practice