Training materials
Difficulty level: Intermediate
and Contributors: Andrea Argentini or Avans Hogeschool or David Castillo or John "Scooter" Morris or Lennart Martens or Patricia Palagi or Prof. Tom Freeman
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hands-on tutorial
Hands-on for 'SQL with R' tutorial
•• intermediateSoftware engineering data-science SQL R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Hands-on for 'SQL with Python' tutorial
•• intermediateSoftware engineering data-science SQL Python jupyter-notebook -
hands-on tutorial
Hands-on for 'Make & Snakemake' tutorial
•• intermediateSoftware engineering data-science -
hands-on tutorial
Hands-on for 'Advanced CLI in Galaxy' tutorial
•• intermediateSoftware engineering data-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'SQL Educational Game - Murder Mystery' tutorial
•• intermediateSoftware engineering data-science game SQL jupyter-notebook -
Documentation, Exercise, Handout, Scripts
PDA19 - Proteomics Data Analysis (2019)
•• intermediateProteomics Biological databases Mass spectrometry data -
Documentation, Exercise, Handout, Scripts
PDA18 - Proteomics Data Analysis (2018)
•• intermediateProteomics Biological databases Mass spectrometry data -
Documentation, Exercise, Handout, Scripts
3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)
•• intermediateHi-C -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation