Training materials
Difficulty level: Beginner
and Contributors: Andrea Argentini or Anne-Françoise Adam-Blondon or Célia Michotey or Dan Bolser or Erasmus+ Programme or Julien Seiler or Martin Krzywinski or Patricia Palagi or Prof. Tom Freeman
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hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
RStudio in Galaxy
• beginnerUsing Galaxy and Managing your Data interactive-tools -
slides
Circos
• beginnerVisualisation -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Mapping
• beginnerSequence analysis
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