Training materials
Contributors: Andrea Argentini or Anne Pajon or Dr. Nils Gehlenborg or Emily Angiolini or Gautam Vallabha or Martin Krzywinski or Mateusz Kuzak or Matthias Fahrner or Patricia Palagi or Prof. Tom Freeman
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hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
••• advancedProteomics DDA SILAC -
hands-on tutorial
DIA Analysis using OpenSwathWorkflow
•• intermediateProteomics DIA -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA -
hands-on tutorial
Statistical analysis of DIA data
•• intermediateProteomics DIA -
hands-on tutorial
Label-free data analysis using MaxQuant
• beginnerProteomics DDA label-free -
hands-on tutorial
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
slides
Getting data into Galaxy
• beginnerUsing Galaxy and Managing your Data -
slides
Options for using Galaxy
• beginnerIntroduction to Galaxy Analyses
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