Training materials
Contributors: Anatole Chessel or CRUK CI Bioinformatics Core or Dr. Iain Milne or Erik Hedman or Pavankumar Videm or Ray Sajulga or SIB Swiss Institute of Bioinformatics or Yvonne Kallberg
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
sib-swiss/spatial-transcriptomics-training
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sib-swiss/reproducible-analysis-training
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bioinformatics-core-shared-training/nextflow_september_2021
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sib-swiss/ena-seqdata-training
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bioinformatics-core-shared-training/Bulk_RNASeq_Course_Nov21
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bioinformatics-core-shared-training/r-basics