Training materials
Contributors: Anatole Chessel or Björn Grüning or Brane Leskosek or David Bouyssié or David Philip Judge or Marius van den Beek or Wendi Bacon or Wolfgang Maier
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
video
RDMbites | Decolonising data management in the biosciences
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video
RDMbites | Data management and disabilities
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video
RDMbites | EDIJ and decolonisation in data management
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video
RDMbites | EDIJ and decolonisation in data management: why should I care?
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hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook