Training materials
Contributors: Anatole Chessel or Bazante Sanders or Biocore@CRG or Bérénice Batut or Dan Bolser or Mehmet Tekman or Pinar Alper or Simon Gladman
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
biocorecrg/CRG_RIntroduction_2021
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biocorecrg/CRG_R_tidyverse_2021
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biocorecrg/SIB_course_nextflow_Nov_2021
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biocorecrg/ELIXIR_containers_nextflow
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biocorecrg/RNAseq_course_2019
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biocorecrg/CoursesCRG_Containers_Nextflow_May_2022