Training materials
Contributors: Anatole Chessel or Anthony Bretaudeau or Bazante Sanders or Bioinformatics, Rockefeller University or Coline Royaux or Janick Mathys or Pavankumar Videm or The Carpentries Lab
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
RockefellerUniversity/RU_tidyverse_core
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carpentries-lab/metagenomics-organization
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RockefellerUniversity/RU_reproducibleR
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RockefellerUniversity/IGV_course
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RockefellerUniversity/RU_GenomicVariants