Training materials
Contributors: Anatole Chessel or Anna Syme or Daniel Sobral or Instituto Gulbenkian de Ciência or JuliaAcademy or Lucille Delisle or Melanie Föll or Pavankumar Videm or Robert Andrews
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
GTPB/ABSTAT18
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GTPB/IBIP19
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GTPB/PDA19
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GTPB/ELB19F
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GTPB/PSLS20