Training materials
Contributors: Anatole Chessel or Anna Syme or Coline Royaux or Dr. Alexander Lex or Dr. Manuel Corpas or Dr. Simon Tomlinson or Jalview Coordinator or Martin Krzywinski or Martin Morgan
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mtmorgan/HCABiocTraining
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hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
Hands-on for 'Visualize EBV cube data with Panoply netCDF viewer' tutorial
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hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Hands-on for 'Biodiversity data exploration' tutorial
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hands-on tutorial
Hands-on for 'Metabarcoding/eDNA through Obitools' tutorial
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hands-on tutorial
Hands-on for 'Compute and analyze biodiversity metrics with PAMPA toolsuite' tutorial
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