Training materials
Contributors: Anatole Chessel or Anna Syme or Björn Grüning or Brane Leskosek or Jan Slifka or Martin Strauch or Oliver Davis or PhD BSc FSB or Saskia Hiltemann or Teaching materials at the Harvard Chan Bioinfor... or carpentries-incubator
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
carpentries-incubator/R-ecology-lesson-intermediate
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carpentries-incubator/gitlab-novice
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carpentries-incubator/fair-for-leaders
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hbctraining/BBS230B_2023
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hbctraining/RNA-seq-CB321qc_2022