Training materials
Contributors: Anatole Chessel or Anna Syme or Anup Kumar or Dr. Ting Wang or NBIS - National Bioinformatics Infrastructure Sweden or Pavankumar Videm or Software Carpentry
-
hands-on tutorial
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
hands-on tutorial
Genome-wide alternative splicing analysis
••• advancedTranscriptomics alternative splicing isoform switching -
hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
NBISweden/module-r-intro-dm-practices
-
NBISweden/module-openrefine-dm-practices