Training materials
Contributors: Alvaro Gonzalez or Armando Arredondo or Björn Grüning or Daniel Sobral or Dave Clements or Software Carpentry or Wolfgang Maier
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hands-on tutorial
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
hands-on tutorial
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
swcarpentry/matlab-novice-inflammation
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swcarpentry/make-novice
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swcarpentry/r-novice-gapminder
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swcarpentry/python-novice-inflammation
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swcarpentry/shell-novice
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swcarpentry/git-novice
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slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration