Training materials
Scientific topics: Sequence analysis or Statistics
and Contributors: Allyson Lister or Célia Michotey or Eija Korpelainen or Helena Rasche or Janick Mathys
-
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Mapping
• beginnerSequence analysis Mapping -
Bioinformatics Summer School 2019
•• intermediateProteomics RNA-Seq Omics Statistics and probability Data handling