Training materials
Contributors: Allegra Via or Branka Franicevic or Bérénice Batut or Chris Evelo or Dr. Iain Milne or Hadley Wickham or Mehmet Tekman or Subina Mehta
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hadley/r-pkgs
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hadley/ggplot2-book
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hadley/mastering-shiny
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hadley/adv-r
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hadley/r4ds
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hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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Video
RDMbites | Sequencing Data QC: causes and consequences