Training materials
Licence: Creative Commons Attribution 4.0 International
and Resource type: hands-on tutorial
and Contributors: Allegra Via or Anton Nekrutenko or Canadian Bioinformatics Workshops or Erik Garrison or Nicola Soranzo
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hands-on tutorial
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Genome Annotation annotation cookbook eukaryote evolution microgalaxy prokaryote vgp -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
Single-cell quality control with scater
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNAseq data analysis (long)
• beginnerTranscriptomics -
hands-on tutorial
External Authentication
• beginnerGalaxy Server administration authentication -
hands-on tutorial
Galaxy Tool Management with Ephemeris
• beginnerGalaxy Server administration git-gat tools
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