Training materials
Scientific topics: Sequence analysis
and Contributors: Allegra Via or Anthony Bretaudeau or Eija Korpelainen or Helena Rasche or Jean-François Dufayard or Marius van den Beek or Yvonne Kallberg
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Mapping
• beginnerSequence analysis Mapping -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Quality Control
• beginnerSequence analysis