Training materials
Contributors: Allegra Via or Anthony Bretaudeau or Dan Bolser or Fotis E. Psomopoulos or Kaivan Kamali or Maria Christina Maniou or Praveen Kumar or Saskia Hiltemann or Software Carpentry
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
swcarpentry/matlab-novice-inflammation
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swcarpentry/make-novice
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swcarpentry/r-novice-gapminder
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swcarpentry/python-novice-inflammation
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swcarpentry/shell-novice
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swcarpentry/git-novice