Training materials
Contributors: Alireza Khanteymoori or John "Scooter" Morris or Martin Hubalek or Mehmet Tekman or Michael Krone or Nicola Soranzo or Portada: Enrique Sahagún or Prof. Tom Freeman or Sabine Österle or Stéphanie Robin
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slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Understanding Barcodes
• beginnerTranscriptomics Single Cell -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell -
slides
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics Single Cell -
slides
Dealing with Cross-Contamination in Fixed Barcode Protocols
• beginnerTranscriptomics Single Cell -
slides
An introduction to scRNA-seq data analysis
•• intermediateTranscriptomics Single Cell -
hands-on tutorial
Introduction to deep learning
• beginnerStatistics and probability Statistics and machine learning -
slides
Connecting Galaxy to a compute cluster
• beginnerGalaxy Server administration features -
hands-on tutorial
Galaxy Installation with Ansible
• beginnerDatabase management Informatics Data management Galaxy Server administration ansible deploying git-gat