Training materials
Contributors: Alireza Khanteymoori or Dr. Konstantinos Sidiropoulos or Dr. Roland Schwarz or Emma Leith or Jason Williams or Kaivan Kamali or Lucille Delisle or Michael Ball or Pavankumar Videm or Vicky Schneider
-
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Creating a new tutorial
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
RNA-RNA interactome data analysis
• beginnerTranscriptomics