Training materials
Contributors: Alireza Khanteymoori or Aravind Venkatesan or Dr. Nils Gehlenborg or Mehmet Tekman or NBIS - National Bioinformatics Infrastructure S... or Niclas Jareborg or Pavankumar Videm or Pedro Fernandes
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
NBISweden/module-r-intro-dm-practices
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NBISweden/module-openrefine-dm-practices
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NBISweden/module-data-publication-dm-practices
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NBISweden/module-metadata-dm-practices
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NBISweden/module-organising-data-dm-practices