Training materials
Contributors: Alireza Khanteymoori or Anna Syme or Dan Bolser or Daniel Sobral or Dr. Scooter Morris or Eija Korpelainen or Kaivan Kamali or Subina Mehta
-
ekorpela/cloud-vm-workshop
-
hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Regression in Machine Learning
• beginnerStatistics and probability Statistics and machine learning -
hands-on tutorial
Classification in Machine Learning
• beginnerStatistics and probability Statistics and machine learning -
hands-on tutorial
Image classification in Galaxy with fruit 360 dataset
• beginnerStatistics and probability Statistics and machine learning -
hands-on tutorial
Clustering in Machine Learning
• beginnerStatistics and probability Statistics and machine learning