Training materials
Contributors: Alireza Khanteymoori or Anatole Chessel or Cristóbal Gallardo or Data Carpentry or Dr. Simon Andrews or John Chilton or Pavankumar Videm or Yvonne Kallberg
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
datacarpentry/rr-version-control
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datacarpentry/rr-literate-programming
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datacarpentry/rr-automation
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datacarpentry/cloud-genomics
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datacarpentry/organization-genomics
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datacarpentry/ecology-workshop