Training materials
Difficulty level: Beginner
and Contributors: Alexandre Cormier or Eija Korpelainen or Michael Krone or Patricia Palagi or Prof. Tom Freeman or Susan Coort or Tuur Muyldermans
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Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
A network biology workflow to study transcriptomics data of the diabetic liver
• beginnerBiological networks Network Visualization -
course materials, Video
Single cell RNA-seq data analysis with Chipster
• beginnerRNA-Seq RNA-Seq Single Cell technologies scRNA-seq -
course materials, Video
Virus detection using small RNA-seq
• beginnerRNA-Seq -
course materials, Video
RNA-seq data analysis
• beginnerRNA-Seq -
Jupyter notebooks
Gentle hands-on introduction to Python programming
• beginnerSoftware engineering Python programming