Training materials
Scientific topics: Software development
and Contributors: Alexandre Cormier or Clemens Blank or Helena Rasche or John "Scooter" Morris or Jure Dimec or Prof. Tom Freeman or Wolfgang Maier
-
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Python - Coding Style
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Data source integration
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
ToolFactory: Generating Tools From Simple Scripts
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
CLI Educational Game - Bashcrawl
•• intermediateSoftware engineering Foundations of Data Science bash game jupyter-notebook -
hands-on tutorial
Python - Subprocess
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Version Control with Git
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science