Training materials
Difficulty level: Beginner
and Contributors: Alexander Botzki or Anna Strachotova or Bruna Piereck Moura or Daniel Sobral or Dr. Nils Gehlenborg or Erwan Corre or Fotis E. Psomopoulos
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
e-learning
Introduction to Linux command line
• beginnerOperating system name Linux -
hands-on tutorial
Teaching experiences
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Live Coding is a Skill
• beginnerTeaching and Hosting Galaxy training -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science