Training materials
Contributors: Alex Ostrovsky or Helena Rasche or John Davis or Mikko Rautiainen or Pavankumar Videm or Ph.D. or Sabine Österle or Wolfgang Maier
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hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
slides
Friends Don't Let Friends Make Bad Graphs
• beginnerVisualisation -
slides
Galaxy and Celery
• beginnerGalaxy Server administration -
hands-on tutorial
FAIR Galaxy Training Material
• beginnerContributing to the Galaxy Training Material fair gtn training -
hands-on tutorial
FAIR data management solutions
•• intermediateFAIR Data management -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
hands-on tutorial
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
hands-on tutorial
Submitting workflows to LifeMonitor
• beginnerFAIR Data, Workflows, and Research ro-crate -
hands-on tutorial
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
•• intermediateMetabolomics -
hands-on tutorial
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics