Training materials
Contributors: Alex Ostrovsky or Eija Korpelainen or Frederick Carver or Gildas Le Corguillé or Martin Hubalek or Michael Krone or Prof. Tom Freeman or Sabine Österle
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ekorpela/cloud-vm-workshop
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Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
hands-on tutorial
Hands-on for 'Calling variants in non-diploid systems' tutorial
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hands-on tutorial
Hands-on for 'Creating Galaxy tools from Conda Through Deployment' tutorial
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hands-on tutorial
Hands-on for 'VGP assembly pipeline' tutorial
•• intermediateassembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateassembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'De novo transcriptome assembly, annotation, and differential expression analysis' tutorial
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hands-on tutorial
Hands-on for 'Downstream Single-cell RNA analysis with RaceID' tutorial
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hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics