Training materials
Target audience: Any student, postdoc or RA who has an interest ... or Anyone wishing to use bioinformatics resources ... or Biologists, Genomicists, Computer Scientists or Students
and Contributors: Alex Ostrovsky or Dannon Baker or David Christiany or Enis Afgan
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hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Biomarker candidate identification
• beginnerProteomics DDA human -
hands-on tutorial
Annotating a protein list identified by LC-MS/MS experiments
• beginnerProteomics DDA human -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell -
slides
Dealing with Cross-Contamination in Fixed Barcode Protocols
• beginnerTranscriptomics Single Cell -
slides
Galaxy workflows in Dockstore
• beginnerUsing Galaxy and Managing your Data