Training materials
Difficulty level: Beginner
and Contributors: Alex Ostrovsky or Collins Assisi or Gautier Sarah or Mikko Rautiainen or SIB Swiss Institute of Bioinformatics or Stéphanie Robin
-
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Creating Galaxy tools from Conda Through Deployment
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell -
slides
Dealing with Cross-Contamination in Fixed Barcode Protocols
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Quality Control
• beginnerSequence analysis
- 1
- 2